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399 words
Applications List
| Software | Availability | OS | Comments |
|---|---|---|---|
| Bioinformatics | Discovery | Linux | Bayesian Inference of phylogeny |
| mrbayes | Discovery | Linux | Complex and flexible comparative phylogeographic inference |
| Chemistry | |||
| autodock | Discovery | Linux | Docking tools, Chemistry |
| Avogadro | Discovery | Linux | Advanced molecular editor, Computational Chemistry |
| Babel | Discovery | Linux | Chemical toolbox, required by Avogadro |
| CSDS | Andes, Polaris | Linux | Cambridge Structural Database and tools |
| Gaussian | Andes, Discovery | Linux | Computational Chemistry. Group license. |
| Jaguar | Discovery | Linux | Ab initio electronic structure package |
| [jwhamp] ( https://rcweb.dartmouth.edu/public/downloads/jwhamp/) | Linux, Windows, Mac | Cold Plasma Simulation code | |
| namd | Discovery | Linux | Parallel Molecular Dynamics code for large biomolecular systems |
| nwchem | Andes, Discovery | Linux | Electronic structure and molecular dynamics calculations |
| Qchem | Discovery | Linux | Electronic Structure Calculations |
| Mathematics | |||
| [Maple] ( https://rcweb.dartmouth.edu/downloads/maple/) | Andes, Polaris, Discovery | Linux | Mathematical and analytical software |
| [Mathematica] ( https://rcweb.dartmouth.edu/downloads/mathematica/) | Andes, Polaris, Discovery | Linux, Windows | Mathematical and analytical software |
| Matlab | Andes, Polaris, Discovery | Linux, Windows, Mac | Mathematical and analytical software |
| Statistics | |||
| [JMP] ( https://rcweb.dartmouth.edu/downloads/jmp/) | Windows, Mac | Statistical software | |
| R | Andes, Polaris, Discovery | Linux | Statistics, data mining |
| R-mpi | Discovery | Linux | Statistics, data mining |
| SAS | Andes, Polaris, Desktop | Linux, Windows | Statistical Analysis Software |
| SPSS | KeyServed | Windows, Mac | Statistical analysis. KeyServed concurrent licenses |
| Stata | Andes, KeyServed | Linux, Windows, Mac | Statistical analysis. KeyServed concurrent licenses |
| Data Visualization and Graphics | |||
| ecce | Polaris, Discovery | Linux | Computational Chemistry graphical interface to NWChem and Gaussian |
| gabedit | Discovery | Linux | Graphical user interface to Computational Chemistry |
| visit | Andes, Polaris, Discovery | Linux | Data analysis and visualization |
| paraview | Andes, Polaris, Discovery | Linux | Data analysis and visualization |
| itk | Discovery | Linux | Insight Toolkit Image Processing |
| idl | Andes, Polaris, Discovery | Linux | Data analysis and Visualization |
| mgltools | Discovery | Linux | Visualization and analysis of molecular structures |
| vmd | Discovery | Mac, Linux, Windows | Visual Molecular Dynamics |
| Compilers | |||
| gfortran | Andes, Polaris, Discovery | Linux | GNU Fortran Compilers |
| gcc | Andes, Polaris, Discovery | Linux | GNU C compilers |
| Intel Compilers | Andes, Polaris, Discovery | Linux | Fortran, C, and C++ compilers |
| PGI Compilers | Discovery | Linux | High-performance computing software |
| Miscellaneous | |||
| [ESRI/ArcGIS] ( https://dartgo.org/esri-arcgis) | Network License | Windows | Remote sensing/GIS |
| FormZ65 | Windows, Mac | Architectural design (Studio Arts Only) | |
| LaTeX | Discovery/Polaris/Andes | Windows/Mac/Linux | Typesetting and documents production |
| mplayer | Discovery | Linux | Movie player for Linux |
| ompP | Discovery | Linux | openMP profiler |
| Qt4 | Discovery | Linux | Cross-platform development tool. Required by Avogadro |
| subversion | Andes, Polaris, Discovery | Linux | Version control |
| TotalView | Discovery, Andes, Polaris | Linux | Code debugger |
| Xwin32 | Concurrent License | Windows | Connectivity |
| Linux Utilities | |||
| Ant | Andes, Polaris, Discovery | Linux | Java-based build tool (make) |
| cmake | Discovery | Linux | Linux build utility |
| mpiexec | Discovery | Linux | MPI parallel job launcher |
| scons | Polaris, Discovery | Linux | Make utility |